OpenAI Codex security directory

Life Science Research

Published by OpenAI

High risk

Helps Codex research life-science questions across public scientific resources. Connect evidence on genes, variants, expression, proteins, chemicals, drugs and pathways. Find studies and literature, prioritize candidate genes and synthesize research findings.

Security assessment

Plutonium assessed this plugin for permissions, capabilities, and security-relevant behavior.

  • Many skills write caller-selected raw results and analysis artifacts: Can read, create, or change files on the local filesystem or in a selected project.
  • Can send data to external services: Can send prompts, files, queries, or connected-service data to an external service.
  • Research workflows execute bundled Python and chained subprocesses: Can execute code, commands, scripts, unrestricted queries, or dynamic gateway actions.

Available capabilities

This add-on exposes 50 tools or capabilities.

  • alphafold-skill
  • bgee-skill
  • bindingdb-skill
  • biobankjapan-phewas-skill
  • biorxiv-skill
  • biostudies-arrayexpress-skill
  • cbioportal-skill
  • cellxgene-skill
  • chebi-skill
  • chembl-skill
  • civic-skill
  • clinicaltrials-skill
  • clinvar-variation-skill
  • efo-ontology-skill
  • encode-skill
  • ensembl-skill
  • epigraphdb-skill
  • eqtl-catalogue-skill
  • eva-skill
  • finngen-phewas-skill
  • genebass-gene-burden-skill
  • gnomad-graphql-skill
  • gtex-eqtl-skill
  • gwas-catalog-skill

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